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1

What can Venn diagrams teach us about doing data science better?

Ho, Sung Yang, Tan, Sophia, Sze, Chun Chau, Wong, Limsoon, Goh, Wilson Wen Bin

Journal:

International Journal of Data Science and Analytics

Year:

2020

File:

PDF, 1.02 MB

2020

2

Enhancing the utility of Proteomics Signature Profiling (PSP) with Pathway Derived Subnets (PDSs), performance analysis and specialised ontologies

Wilson Wen Bin Goh, Mengyuan Fan, Hong Sang Low, Marek Sergot, Limsoon Wong

Journal:

Year:

2013

Language:

english

File:

PDF, 686 KB

english, 2013

3

Class-paired Fuzzy SubNETs: A paired variant of the rank-based network analysis family for feature selection based on protein complexes

Goh, Wilson Wen Bin, Wong, Limsoon

Journal:

Year:

2017

Language:

english

File:

PDF, 1.46 MB

english, 2017

4

Dealing with Confounders in Omics Analysis

Goh, Wilson Wen Bin, Wong, Limsoon

Journal:

Trends in Biotechnology

Year:

2018

Language:

english

File:

PDF, 1.94 MB

english, 2018

5

Effect of serum amyloid A1 treatment on global gene expression in THP-1-derived macrophages

Koon-Yeow Leow, Wilson Wen Bin Goh, Chew-Kiat Heng

Journal:

Inflammation Research

Year:

2012

Language:

english

File:

PDF, 280 KB

english, 2012

6

Integrative Toxicoproteomics Implicates Impaired Mitochondrial Glutathione Import as an Off-Target Effect of Troglitazone

Lee, Yie Hou, Goh, Wilson Wen Bin, Ng, Choon Keow, Raida, Manfred, Wong, Limsoon, Lin, Qingsong, Boelsterli, Urs A., Chung, Maxey C. M.

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 1.60 MB

english, 2013

7

Computational proteomics: designing a comprehensive analytical strategy

Goh, Wilson Wen Bin, Wong, Limsoon

Journal:

Drug Discovery Today

Year:

2014

Language:

english

File:

PDF, 1.91 MB

english, 2014

8

Correction to “Comparative Network-Based Recovery Analysis and Proteomic Profiling of Neurological Changes in Valproic Acid-Treated Mice”

Goh, Wilson Wen Bin, Sergot, Marek J., Sng, Judy C. G., Wong, Limsoon

Journal:

Journal of Proteome Research

Year:

2013

File:

PDF, 104 KB

2013

9

Proteomics Signature Profiling (PSP): A Novel Contextualization Approach for Cancer Proteomics

Goh, Wilson Wen Bin, Lee, Yie Hou, Ramdzan, Zubaidah M., Sergot, Marek J., Chung, Maxey, Wong, Limsoon

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 1.49 MB

english, 2012

10

Variant screening of the serum amyloid A1 gene and functional study of the p.Gly90Asp variant for its role in atherosclerosis

Leow, Koon-Yeow, Goh, Wilson Wen Bin, Tan, Si-Zhen, Lim, Jimmy, Ng, Kenneth, Oh, Vernon Min-Sen, Low, Adrian Fatt-Hoe, Heng, Chew-Kiat

Journal:

Atherosclerosis

Year:

2013

Language:

english

File:

PDF, 249 KB

english, 2013

11

Networks in proteomics analysis of cancer

Goh, Wilson Wen Bin, Wong, Limsoon

Journal:

Current Opinion in Biotechnology

Year:

2013

Language:

english

File:

PDF, 952 KB

english, 2013

12

Network-Based Pipeline for Analyzing MS Data: An Application toward Liver Cancer

Goh, Wilson Wen Bin, Lee, Yie Hou, Zubaidah, Ramdzan M., Jin, Jingjing, Dong, Difeng, Lin, Qingsong, Chung, Maxey C. M., Wong, Limsoon

Journal:

Journal of Proteome Research

Year:

2011

Language:

english

File:

PDF, 4.58 MB

english, 2011

13

Comparative Network-Based Recovery Analysis and Proteomic Profiling of Neurological Changes in Valproic Acid-Treated Mice

Goh, Wilson Wen Bin, Sergot, Marek J., Sng, Judy Cg, Wong, Limsoon

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 3.13 MB

english, 2013

14

Design principles for clinical network-based proteomics

Goh, Wilson Wen Bin, Wong, Limsoon

Journal:

Drug Discovery Today

Year:

2016

Language:

english

File:

PDF, 570 KB

english, 2016

15

Quantitative proteomics signature profiling based on network contextualization

Goh, Wilson Wen Bin, Guo, Tiannan, Aebersold, Ruedi, Wong, Limsoon

Journal:

Year:

2015

Language:

english

File:

PDF, 3.34 MB

english, 2015

16

Integrating Networks and Proteomics: Moving Forward

Goh, Wilson Wen Bin, Wong, Limsoon

Journal:

Trends in Biotechnology

Year:

2016

Language:

english

File:

PDF, 1.27 MB

english, 2016

17

A network-based maximum link approach towards MS identifies potentially important roles for undetected ARRB1/2 and ACTB in liver cancer progression

Goh, Wilson Wen Bin, Lee, Yie Hou, Ramdzan, Zubaidah M., Chung, Maxey C.M., Wong, Limsoon, Sergot, Marek J.

Journal:

International Journal of Bioinformatics Research and Applications

Year:

2012

Language:

english

File:

PDF, 857 KB

english, 2012

18

Analysing extremely small sized ratio datasets

Ricchiuto, Piero, Sng, Judy C.G., Goh, Wilson Wen Bin

Journal:

International Journal of Bioinformatics Research and Applications

Year:

2015

Language:

english

File:

PDF, 1.40 MB

english, 2015

19

Advancing Clinical Proteomics via Analysis Based on Biological Complexes: A Tale of Five Paradigms

Goh, Wilson Wen Bin, Wong, Limsoon

Journal:

Journal of Proteome Research

Year:

2016

Language:

english

File:

PDF, 1.58 MB

english, 2016

20

Evaluating feature-selection stability in next-generation proteomics

Goh, Wilson Wen Bin, Wong, Limsoon

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2016

Language:

english

File:

PDF, 997 KB

english, 2016

21

PARP9 and PARP14 cross-regulate macrophage activation via STAT1 ADP-ribosylation

Iwata, Hiroshi, Goettsch, Claudia, Sharma, Amitabh, Ricchiuto, Piero, Goh, Wilson Wen Bin, Halu, Arda, Yamada, Iwao, Yoshida, Hideo, Hara, Takuya, Wei, Mei, Inoue, Noriyuki, Fukuda, Daiju, Mojcher, Al

Journal:

Nature Communications

Year:

2016

Language:

english

File:

PDF, 4.66 MB

english, 2016

22

Network-based characterization of the synaptic proteome reveals that removal of epigenetic regulator Prmt8 restricts proteins associated with synaptic maturation

Lee, Patrick Kia Ming, Goh, Wilson Wen Bin, Sng, Judy Chia Ghee

Journal:

Journal of Neurochemistry

Year:

2017

Language:

english

File:

PDF, 1.74 MB

english, 2017

23

Spectra-first feature analysis in clinical proteomics — A case study in renal cancer

Goh, Wilson Wen Bin, Wong, Limsoon

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2016

Language:

english

File:

PDF, 2.43 MB

english, 2016

24

Why Batch Effects Matter in Omics Data, and How to Avoid Them

Goh, Wilson Wen Bin, Wang, Wei, Wong, Limsoon

Journal:

Trends in Biotechnology

Year:

2017

Language:

english

File:

PDF, 1.20 MB

english, 2017

25

Fuzzy-FishNET: a highly reproducible protein complex-based approach for feature selection in comparative proteomics

Wilson Wen Bin Goh

Journal:

BMC Medical Genomics

Year:

2016

Language:

english

File:

PDF, 728 KB

english, 2016

26

NetProt: Complex-based feature selection

Goh, Wilson Wen Bin, Wong, Limsoon

Journal:

Journal of Proteome Research

Year:

2017

Language:

english

File:

PDF, 8.63 MB

english, 2017

27

Protein complex-based analysis is resistant to the obfuscating consequences of batch effects --- a case study in clinical proteomics

Wilson Wen Bin Goh,Limsoon Wong

Journal:

Year:

2017

Language:

english

File:

PDF, 1.37 MB

english, 2017

28

Advanced bioinformatics methods for practical applications in proteomics

Goh, Wilson Wen Bin, Wong, Limsoon

Journal:

Briefings in Bioinformatics

Year:

2017

Language:

english

File:

PDF, 351 KB

english, 2017

29

Understanding missing proteins: a functional perspective

Zhou, Longjian, Wong, Limsoon, Goh, Wilson Wen Bin

Journal:

Drug Discovery Today

Year:

2017

Language:

english

File:

PDF, 709 KB

english, 2017

30

Why breast cancer signatures are no better than random signatures

Goh, Wilson Wen Bin, Wong, Limsoon

Journal:

Drug Discovery Today

Year:

2018

Language:

english

File:

PDF, 336 KB

english, 2018

31

Turning straw into gold: building robustness into gene signature inference

Goh, Wilson Wen Bin, Wong, Limsoon

Journal:

Drug Discovery Today

Year:

2018

Language:

english

File:

PDF, 753 KB

english, 2018

32

Sample-to-sample p-value variability and its implications for multivariate analysis

Wang, Wei, Goh, Wilson Wen Bin

Journal:

International Journal of Bioinformatics Research and Applications

Year:

2018

Language:

english

File:

PDF, 4.06 MB

english, 2018

33

AI Paradigms for Teaching Biotechnology

Goh, Wilson Wen Bin, Sze, Chun Chau

Journal:

Trends in Biotechnology

Year:

2018

Language:

english

File:

PDF, 998 KB

english, 2018

34

Targeting metabolic flexibility via angiopoietin-like 4 protein sensitizes metastatic cancer cells to chemotherapy drugs

Lim, Maegan Miang Kee, Wee, Jonathan Wei Kiat, Soong, Jen Chi, Chua, Damien, Tan, Wei Ren, Lizwan, Marco, Li, Yinliang, Teo, Ziqiang, Goh, Wilson Wen Bin, Zhu, Pengcheng, Tan, Nguan Soon

Journal:

Molecular Cancer

Year:

2018

Language:

english

File:

PDF, 3.13 MB

english, 2018

35

Can Peripheral Blood-Derived Gene Expressions Characterize Individuals at Ultra-high Risk for Psychosis?

Goh, Wilson Wen Bin, Sng, Judy Chia-Ghee, Yee, Jie Yin, See, Yuen Mei, Lee, Tih-Shih, Wong, Limsoon, Lee, Jimmy

Journal:

Computational Psychiatry

Year:

2017

Language:

english

File:

PDF, 794 KB

english, 2017

36

Proteomic investigation of intra-tumor heterogeneity using network-based contextualization — A case study on prostate cancer

Goh, Wilson Wen Bin, Zhao, Yaxing, Sue, Andrew Chi-Hau, Guo, Tiannan, Wong, Limsoon

Journal:

Journal of Proteomics

Year:

2019

Language:

english

File:

PDF, 1.39 MB

english, 2019

37

Moving beyond the current limits of data analysis in longevity and healthy lifespan studies

Wen Bin Goh, Wilson, Thalappilly, Subhash, Thibault, Guillaume

Journal:

Drug Discovery Today

Year:

2019

Language:

english

File:

PDF, 2.26 MB

english, 2019

38

Examining the practical limits of batch effect-correction algorithms: When should you care about batch effects?

Zhou, Longjian, Chi-Hau Sue, Andrew, Bin Goh, Wilson Wen

Journal:

Journal of Genetics and Genomics

Year:

2019

Language:

english

File:

PDF, 4.00 MB

english, 2019

39

The Birth of Bio-data Science: Trends, Expectations, and Applications

Goh, Wilson Wen Bin, Wong, Limsoon

Journal:

Genomics, Proteomics & Bioinformatics

Year:

2020

File:

PDF, 553 KB

2020

40

Avoid Oversimplifications in Machine Learning: Going beyond the Class-Prediction Accuracy

Ho, Sung Yang, Wong, Limsoon, Goh, Wilson Wen Bin

Journal:

Year:

2020

File:

PDF, 763 KB

2020

41

How to do quantile normalization correctly for gene expression data analyses

Zhao, Yaxing, Wong, Limsoon, Goh, Wilson Wen Bin

Journal:

Scientific Reports

Year:

2020

File:

PDF, 4.05 MB

2020

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